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On-line Tools | Data Bank | Resources | Education | Company | Institute | Software
On-line Tools
  • ncIDP- Neighbor Corrected IDP Library - Allows prediction of nuclear shielding constants for a polypeptide sequence. ncIDP is a web application consisting of 3 reversible steps. The software can be interfaced with available protein chemical shift analysis tools, such as chemical shift index (CSI), structural propensity score assessment for intrinsically disordered proteins, and protein structure modeling from chemical shift information (CS-Rosetta).
  • RCI- Ramdom Coil Index - RCI webserver predicts protein flexibility by calculating the Random Coil Index from backbone chemical shifts (Cα, CO, Cβ, N, Hα, NH) and estimating values of model-free order parameters as well as per-residue RMSF of NMR and MD ensembles from the Random Coil Index.
  • ShereKhan- Calculating molecular exchange rates -
  • ExPASy-Bioinformatics Resource Portal - ExPASy is the SIB Bioinformatics Resource Portal which provides access to scientific databases and software tools (i.e., resources) in different areas of life sciences including proteomics, genomics, phylogeny, systems biology, population genetics, transcriptomics etc. (see Categories in the left menu).
Data Bank
  • BioMagResBank - A Repository for Data from NMR Spectroscopy on Proteins, Peptides, and Nucleic Acids [BMRB]
  • Protein Data Bank - The protein Data Bank is operated by the Research collaboratory for Structural Bioinformatics (RCSB) [PDB]
Resources
  • NBRP NMR Core Facility - National Biotechnology Research Park (NBRP) NMR Core Facility aims to support pharmaceutical-related research anddevelopment, especially for biomedical technology industry to develop small molecule drugs.  >> Service Charge
  • NMR Knowledge Base - This web site is dedicated to bring you the most complete NMR resource site available on the Internet
  • NMR Spectroscopy at EMBL- This NMR WWW Server contains Serrano, Sattle, and Nilges's groups and lots of EMBL NMR Links
  • National Magnetic Resonance Facility At Madison - This is an NIH-supported biomedical Technology Research Resource Center at University of Wisconsin- Madison
Education
Company
  • BRUKER - Bruker's NMR Division in USA
  • BRUKER -Bruker's NMR Division in Germany
Institute
Software
  • Molmol - MOLMOL is a molecular graphics program for displaying, analyzing, and manipulating the three-dimensional structure of biological macromolecules, with special emphasis on the study of protein or DNA structures determined by NMR.
  • InsightII - 3D graphical environment for molecular modeling
  • CNS- Crystallography & NMR System (CNS) is the result of an international collaborative effort among several research groups. The program has been designed to provide a flexible multi-level hierachical approach for the most commonly used algorithms in macromolecular structure determination.
  • XPLOR-NIH - XPLOR-NIH is a structure determination program which builds on the X-PLOR program, including additional tools developed at the NIH.
  • TopSpin- For NMR data analysis and the acquisition and processing of NMR spectra.
  • AFNI - AFNI (Analysis of Functional NeuroImages) is a leading software suite of C, Python, R programs and shell scripts primarily developed for the analysis and display of anatomical and functional MRI (FMRI) data.
  • Sparky - Sparky is the most popular NMR analysis tool for biomolecules for more than a decade.
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